class II, major histocompatibility complex, transactivator (CIITA) - 2905 nt intron 03 reference sequence

(intronic numbering for coding DNA Reference Sequence)
         .         .         .         .         .         .  g.19627
gtgaggaagcacctgagcccagaaaaggacaatcaagggcaagagttctttgctgccact  c.295+60

         .         .         .         .         .         .  g.19687
tgtcaatatcacccattcatcatgagccacgtcagtcccctcccacagaaatcattgcaa  c.295+120

         .         .         .         .         .         .  g.19747
gggggatgcggagcaatggctggaggaacggagactccagggaagagaggggagatggag  c.295+180

         .         .         .         .         .         .  g.19807
gccagtgggggaaataggccccttcactaatgaccaccaagaaaacaaaatctcatgttt  c.295+240

         .         .         .         .         .         .  g.19867
acatcctccacctccatttctatacgcatttctgcttcttgctcttctgtccatcctttc  c.295+300

         .         .         .         .         .         .  g.19927
tacaaagcccataccatacacccctttcccttttcctcccagctccttagccaagctact  c.295+360

         .         .         .         .         .         .  g.19987
ctagtatttgtaataactagcatttactggatactcatagtatgctcattgctgtccata  c.295+420

         .         .         .         .         .         .  g.20047
cattatcatctggaatccttacaacaacaaaggaaatacatattattagtttctgtcttt  c.295+480

         .         .         .         .         .         .  g.20107
tacaaatgaggaaattgaggtttagagaggtgaaacgacctacccaagtttgcattagag  c.295+540

         .         .         .         .         .         .  g.20167
atagtaatgtacagatctgaaattctaacctaggtctttctcgtttcaaagtctccattt  c.295+600

         .         .         .         .         .         .  g.20227
ttaaccacaaaaaaagaaagtgtctggggttggaagatttgctaaggcttaagcagagaa  c.295+660

         .         .         .         .         .         .  g.20287
gctaatttgtagccttaagaagagctacagctttcagacaagggcaggactcttggggag  c.295+720

         .         .         .         .         .         .  g.20347
aggtggtggtggtgttgctgctagtggtttgttttttgggggagagacgtgggatagaga  c.295+780

         .         .         .         .         .         .  g.20407
atctcttctcaccagcatcaccaccacctcatacagagcctatgttgaaatagaaaaaag  c.295+840

         .         .         .         .         .         .  g.20467
tggcctttttctggaggatgcagcccctaccaggaagtaactgcttggctagcaaagtgc  c.295+900

         .         .         .         .         .         .  g.20527
aagccggagtcctgcccccattttccttgttggcttgggcacctgtgtgcagtgaacaac  c.295+960

         .         .         .         .         .         .  g.20587
ctgcaaaactcttcttagtggtcttcttcctgccaacccaggaacagcagcattcagcag  c.295+1020

         .         .         .         .         .         .  g.20647
ttctgtgcttgatccaaatgtggccaatttttccccagagcacagtgtattgaaaatcat  c.295+1080

         .         .         .         .         .         .  g.20707
accaaggaagaaaatggaggggactagtaattgttcatgtttcagaaattacagaactga  c.295+1140

         .         .         .         .         .         .  g.20767
gagcttgactgcttccttcccttcctggggatttacatgggggaagcagaagtgattggg  c.295+1200

         .         .         .         .         .         .  g.20827
gctgaggacattcacatttcctcacaactggaggcagtcattaaggatttgggcatgtca  c.295+1260

         .         .         .         .         .         .  g.20887
taggatttgggtgtttttctccccccttagtggcatctccacaggcagcgaaagctgtct  c.295+1320

         .         .         .         .         .         .  g.20947
aagcaaataggtgaggcagtgcgttagtccattttttgttgcttaaaacaacatacctga  c.295+1380

         .         .         .         .         .         .  g.21007
cactgagtaatttataaagaaaaaaaatatttcttacagttatggaggctgagaagtcca  c.295+1440

         .     g.21020
aggttaggggctg  c.295+1453

--------------------- middle of intron ---------------------
                                    g.21021       .           g.21032
                                    c.296-1452  catctggtgagg  c.296-1441

.         .         .         .         .         .           g.21092
gccttcttactggtgaggactctctgcagagtcccaaggcagtgtggggcatcacgaggc  c.296-1381

.         .         .         .         .         .           g.21152
aagaggtttcggtgtgatagtctctcttcctcttctcataaaaccactagtcttactccc  c.296-1321

.         .         .         .         .         .           g.21212
acgacaacccattaacttattaacctgtttatccactaatccatgaacggattaacccat  c.296-1261

.         .         .         .         .         .           g.21272
tcatcaaggaaaagccccagtcacctcttaaaggccccacctctcaatactgccacatag  c.296-1201

.         .         .         .         .         .           g.21332
gggattacatttatacatgagttttggagaagacaaacattcacgtcataacaggcagct  c.296-1141

.         .         .         .         .         .           g.21392
tcacccaagtctgctcctcaagtctgtgggttttctctctgcttctggaaggtgaagccc  c.296-1081

.         .         .         .         .         .           g.21452
aggcctgggcaagtattcttttgcagcatcctgaaatatgaccttagcttctaaatgtgt  c.296-1021

.         .         .         .         .         .           g.21512
aaaatggagataataatcacacccaccatcacgggatggttgtaagactgaataagttac  c.296-961

.         .         .         .         .         .           g.21572
aatgtgtaaagcatttagaaaaggaatttgcacagagtaagcattcagtagatgttaggt  c.296-901

.         .         .         .         .         .           g.21632
actaccccacaaccaccgttatcattattatcaccatcattattatcatcttcattttca  c.296-841

.         .         .         .         .         .           g.21692
tcaccttcattatggccatcattccattcctcagctcagaagccttctatggctccccat  c.296-781

.         .         .         .         .         .           g.21752
tgcttataaaatcaagtcctaactttccccagcatgaaacttctaccaccgtcacctatc  c.296-721

.         .         .         .         .         .           g.21812
tctcagggtttcctaaacatactctgaacaagtttcctcactctgccactgtgacccaga  c.296-661

.         .         .         .         .         .           g.21872
aagctatctgttctccttctcccagactctgcctcatctttcaaggcctggttccaggat  c.296-601

.         .         .         .         .         .           g.21932
cccttcctccaggaagccttccctgattgccctattccaccatacaccttttttctcgga  c.296-541

.         .         .         .         .         .           g.21992
cttcatgtcatggtgcctatattccaagggctctgagccatgtacccctttatatagtta  c.296-481

.         .         .         .         .         .           g.22052
ccactatttactgagtgcctactgtataccagctactgtgttggatgctctagatgtaga  c.296-421

.         .         .         .         .         .           g.22112
acctctaattatcaccatcgattcctgggtagtaggcattatttattcatcttacacaga  c.296-361

.         .         .         .         .         .           g.22172
tgagaaaatggaggcccacagtggttaaataagtagcccaagattgcacagctagtaggg  c.296-301

.         .         .         .         .         .           g.22232
ctagtggaaagtagaggtggaatttgaactcaaatcctgcagtaactctaccattctgcc  c.296-241

.         .         .         .         .         .           g.22292
ttgctcttctttgtagcagtagataagttttcatggatacatacctcatccttttgatta  c.296-181

.         .         .         .         .         .           g.22352
gattaagggcccctggagtgtcagtgttcattcatttgtttgatcattcattcattcaac  c.296-121

.         .         .         .         .         .           g.22412
aaacatttcttgagtccccactgtgtgccaggcccagaggttccccagcccaaggcctgg  c.296-61

.         .         .         .         .         .           g.22472
cacacagtgggccttcagttagaccttgttgattgactgcgcttttccttgtctgggcag  c.296-1