class II, major histocompatibility complex, transactivator (CIITA) - 5310 nt intron 13 reference sequence

(intronic numbering for coding DNA Reference Sequence)


         .         .         .         .         .         .  g.34122
gtaagcaaaggggtggattgtcttgtgggtctgcgcaaggtttcccctgcagcattagct  c.2888+60

         .         .         .         .         .         .  g.34182
gggcttgtaccacctgaatggagatagatctccagaatcattcttaccctcttgcccacc  c.2888+120

         .         .         .         .         .         .  g.34242
actttggaaatagcttccagcagctggaaagtgaccagtgtgggcaaatgctggaggttc  c.2888+180

         .         .         .         .         .         .  g.34302
tcagatttgaagctaatggacccgtttgctggttaacatggtcattcccatcactcattc  c.2888+240

         .         .         .         .         .         .  g.34362
aacagaggtattgagcacttgaatgactgaggctgctgtcctcatgagctgacagtctaa  c.2888+300

         .         .         .         .         .         .  g.34422
tcaactcccctctggaggaggtcagggggacttcctggaggaggtgatatctgcactgaa  c.2888+360

         .         .         .         .         .         .  g.34482
gcttcagtgaggataaggaatgagctgagtggggagaggggagtaagaaaggctttccag  c.2888+420

         .         .         .         .         .         .  g.34542
gaattgtaatttcgccagggatcagaaaaggcccaatgtgtccccaaccttccataggag  c.2888+480

         .         .         .         .         .         .  g.34602
gatgccactatgactatggagtccttttccctcctgtggccaggaactgcacaacgtccc  c.2888+540

         .         .         .         .         .         .  g.34662
ttgtgcctgagcttgtttacttccacagccaagggatggcctccccagggagaatctttc  c.2888+600

         .         .         .         .         .         .  g.34722
ccccattttgaaattcccaggagcttttgatgtgcagctaggatgaaaaagcaaccctac  c.2888+660

         .         .         .         .         .         .  g.34782
ttgcctgggactatcctggtttgaaaactgaaagtcttgcatcccaagaagccccttagt  c.2888+720

         .         .         .         .         .         .  g.34842
cccaggcaaactgggacagttggttgctctatgtgtggccagggctgggggccacaccct  c.2888+780

         .         .         .         .         .         .  g.34902
aggcagtgttgctggggtgacagaaatggagacctaggcaaggctctagggagtccagtt  c.2888+840

         .         .         .         .         .         .  g.34962
gtgtctgggtcactgaggaggggcagcccaccatacatgggccccaagaaagcacaataa  c.2888+900

         .         .         .         .         .         .  g.35022
ttattatatttagatctgtcagaatatagcttttctttctttctttcctttcttctctct  c.2888+960

         .         .         .         .         .         .  g.35082
ttctttttctttctttcttctttctttctttctctctttctttcctctttctttcctttc  c.2888+1020

         .         .         .         .         .         .  g.35142
ccttccttttctttccttccctccctccctccttccttccttccctccctcccttcttcc  c.2888+1080

         .         .         .         .         .         .  g.35202
cccttttcttctttttctttctctctgtttctttctttctttctctctctctctcccttc  c.2888+1140

         .         .         .         .         .         .  g.35262
cttcctccctccctatctctctctttctttctttctttccttcttttctttctttccttt  c.2888+1200

         .         .         .         .         .         .  g.35322
ctctcctttctctttctttctttccattctctttctttctctttccttccctcccttcct  c.2888+1260

         .         .         .         .         .         .  g.35382
tctcttccttccttctttttcctttccttttctttccttttcttttctttcttgaggcag  c.2888+1320

         .         .         .         .         .         .  g.35442
agtcttactctgtccctcaggctggagttcagtggcacaatcacagctcaccacagcctc  c.2888+1380

         .         .         .         .         .         .  g.35502
aacctccctaggctcaagtgatcctcccacctcagcctccctagtagctgggactacagg  c.2888+1440

         .         .         .         .         .         .  g.35562
catgccccacctgactaatttttgtattttttgtagagacaggatttcaccatgttgccc  c.2888+1500

         .         .         .         .         .         .  g.35622
agtctggtctcgagctcctgggctcaagcaatcctcccacctcagcctcccaaagtgcta  c.2888+1560

         .         .         .         .         .         .  g.35682
ggattacaggtgcgagctcccgcacctggccagaacaggcttttaaatttgcagctcacc  c.2888+1620

         .         .         .         .         .         .  g.35742
ttccatctcaattatctcaggccaccctcctctacaggcattgtcatcatctccccattg  c.2888+1680

         .         .         .         .         .         .  g.35802
tacaaatggcaatgctgagaacaagagactttaaattgtttatccaaagtcataaaggtc  c.2888+1740

         .         .         .         .         .         .  g.35862
aggtcagcctggccctaagctccttccacagaaaaagctaaatgaatgtttgttccttgg  c.2888+1800

         .         .         .         .         .         .  g.35922
taggggtctagatcatctaatgattaggaaggagttgttatgcctgtggtatattcggtg  c.2888+1860

         .         .         .         .         .         .  g.35982
ctgtttttttttggagatggggtcttgctctgtcacccaggctagaatgcagtggtatga  c.2888+1920

         .         .         .         .         .         .  g.36042
tcttggctcactgcaatctccacctctcggttcaagcaattttcctgcctcagcctcccg  c.2888+1980

         .         .         .         .         .         .  g.36102
agtagctgggattacaggtgtacaccactacacctggctaatttttgtatttttagtaga  c.2888+2040

         .         .         .         .         .         .  g.36162
gacgggctttaaccatgttggccaggctggtcttgaactcctggcctcagatgttcctcc  c.2888+2100

         .         .         .         .         .         .  g.36222
cacctcagcctcccaaagtgctgggattacaggtgtaagccaccatgcccagcttataat  c.2888+2160

         .         .         .         .         .         .  g.36282
tcagtgcattttatatataatctcattaatctcaagagctactgtggaagacagacagtc  c.2888+2220

         .         .         .         .         .         .  g.36342
atcatcttccccattttacagatgaggagacggaggcctggtgaggttaagtgacttgcc  c.2888+2280

         .         .         .         .         .         .  g.36402
cgtggtcccccagctggtcacccacaagctatcagctctccctgatcactgctcccctgt  c.2888+2340

         .         .         .         .         .         .  g.36462
gccccagaaaaaagccagtgtctcttgttttgaacagagacaaggtgctaaatttgtcca  c.2888+2400

         .         .         .         .         .         .  g.36522
gaggtaaaaatgatgctgaaaaggggaaatgtctgaaaacaataactgagggccctttct  c.2888+2460

         .         .         .         .         .         .  g.36582
ggccttaaattattttcagctgaaaaagcccctagttcaagatcggaactgcgctctggg  c.2888+2520

         .         .         .         .         .         .  g.36642
gaacagcggccatggggtggaacagcctagagccgggtgatcagccacctggagaccgga  c.2888+2580

         .         .         .         .         .         .  g.36702
agcccccgaggaggttctgaggaaggaaggaaggaaggaaaagactatttctggcatttt  c.2888+2640

         .       g.36717
ctcaggcttctactg  c.2888+2655

--------------------- middle of intron ---------------------
                                g.36718           .           g.36732
                                c.2889-2655  tgcccaggcaccctg  c.2889-2641

.         .         .         .         .         .           g.36792
tagacctcatctgtctgtcaaatcagggttcttagccactcacaaccctacagggacttc  c.2889-2581

.         .         .         .         .         .           g.36852
gtttgtacacagagtccttccccagttcagtccccactcacctgttcacccttatctcct  c.2889-2521

.         .         .         .         .         .           g.36912
acactcgctgggtgctctctccattccagccacagggcctccttgctggctttcaacctc  c.2889-2461

.         .         .         .         .         .           g.36972
ctaggcatgcttctgcctccaggcctttgcaccggctgtgccctctgcctggaatacttc  c.2889-2401

.         .         .         .         .         .           g.37032
tccccagatatctgcatggctcatgccttcacctcctctggtctttactcagtgaggcct  c.2889-2341

.         .         .         .         .         .           g.37092
tttcttttctttctttccctgtttctttctttctttctttccctcctttctttctttctt  c.2889-2281

.         .         .         .         .         .           g.37152
tccctttctttctttctttttccttttttctttttctttttttgaggtggagtctcgctc  c.2889-2221

.         .         .         .         .         .           g.37212
tgtcacccaggctggagtgcagtggcacaatctcgactcactgcaacctcctcctcccaa  c.2889-2161

.         .         .         .         .         .           g.37272
gtccaagtgattctcttgcctcagcctcccgagtagctgggactacaggcacatgtcacc  c.2889-2101

.         .         .         .         .         .           g.37332
acatctggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaggat  c.2889-2041

.         .         .         .         .         .           g.37392
ggtctcaatcttctgacctcgtgatccccccacctcggcctcccaaagtgctgggattac  c.2889-1981

.         .         .         .         .         .           g.37452
aggcgtgagccaccacacccggcctcagtgaggtcttttctgaccctcacagttaaaaat  c.2889-1921

.         .         .         .         .         .           g.37512
aaaactctggccaggcgcagtggcttatgcctgtaatcccagcactttgggaggccgagg  c.2889-1861

.         .         .         .         .         .           g.37572
caggtggatcacaaggccaggagtttgagaccagcctggccaacatagtgaaaccccatc  c.2889-1801

.         .         .         .         .         .           g.37632
tctactaaatatacaaaacaaattagctgggcatggtggcaggtgcctgtagtcacagct  c.2889-1741

.         .         .         .         .         .           g.37692
acttgggaggctgaggcaggagaatcatttgaaaccgggaggcggaggttgcggtgagct  c.2889-1681

.         .         .         .         .         .           g.37752
gagatcacgccactgcagtccagcttggatgacagagtgagaccccatctcaaaaataaa  c.2889-1621

.         .         .         .         .         .           g.37812
taaataaataaataaatagaactccattcccctcatggttaaaaaaaaaactccatcccc  c.2889-1561

.         .         .         .         .         .           g.37872
ctcaccactgtatatttccatatgattcattgtctcagacatcagcttgctttccgattt  c.2889-1501

.         .         .         .         .         .           g.37932
ctttgattatctgtctatcttcccccctggaatgtcagcacccagaaggcagggattttc  c.2889-1441

.         .         .         .         .         .           g.37992
gtctgtttggcccacaactttcctccctgggcctggcacatagtaggcaagcggtcaata  c.2889-1381

.         .         .         .         .         .           g.38052
tttaacaacgaatgccttaatccaagaacccccataagattggggtgaaatatttgagga  c.2889-1321

.         .         .         .         .         .           g.38112
gatcaagacttaagggtgaagggatttgccaaggcctttagcagggagccaaatgccaga  c.2889-1261

.         .         .         .         .         .           g.38172
tcctggagtcaaactctgatcctgtggccttttgctgaggccagtgttctcagacttcag  c.2889-1201

.         .         .         .         .         .           g.38232
gatttcagaggccgagaacatttcggaatgaattcgagtgaccgtgcgcggttactgttt  c.2889-1141

.         .         .         .         .         .           g.38292
tttaatgtttatcaaggatgctcattcaaacaaacaaataacaacaaaatacccactgct  c.2889-1081

.         .         .         .         .         .           g.38352
ggcaccataattttaccaaagaatgatcattctaatattgaaaaagttcaaaggacataa  c.2889-1021

.         .         .         .         .         .           g.38412
ttgcagaataaaagacagctctttatatggaatgcatttaaccatatttttaaactaaac  c.2889-961

.         .         .         .         .         .           g.38472
ggcccttcgttgtccttatttttctcatccccttgaagtctgctctaaatgttgatccag  c.2889-901

.         .         .         .         .         .           g.38532
gctgtgtgaccctgtgtgagctatttgatcgcctagtgcctcagtttccctatatgtaaa  c.2889-841

.         .         .         .         .         .           g.38592
atggagataagagcccatagctcagagtcttgaggagtaaatgagatctaggccgaggga  c.2889-781

.         .         .         .         .         .           g.38652
agggcctagcatgcccctggcttataataaatgctcaacaaatggttccttttgttatta  c.2889-721

.         .         .         .         .         .           g.38712
aaatgcaaaggcatattagtcaaccacctggtttaccactggcagtggtcgtcagctggc  c.2889-661

.         .         .         .         .         .           g.38772
atttcaggaccccttccccaggctgcggcgggagaagggtatctgtggatgttgggaaga  c.2889-601

.         .         .         .         .         .           g.38832
gtaagaactggctccctacttagagacaaaagctggggagccccaagatgggagcccaac  c.2889-541

.         .         .         .         .         .           g.38892
ttacctctttttcttttctttttttgttttttttcttttttgagacagggtctcgctctt  c.2889-481

.         .         .         .         .         .           g.38952
acccaggctggagtgcagtggtgtgatcatggctcactgcatcctccacctcctgggctc  c.2889-421

.         .         .         .         .         .           g.39012
aagcgatgcttccacctcagcctcctaagaagctgagaccacaggacacaccaccacact  c.2889-361

.         .         .         .         .         .           g.39072
tggctaattattgtgttttttgtagagactgagtctcactatgttgcccaagctggtctt  c.2889-301

.         .         .         .         .         .           g.39132
gaactcctgggctcaagcagtcctcttaccttggcctcccaaaatgctggaattacagac  c.2889-241

.         .         .         .         .         .           g.39192
atgagccactgttcccagcctcaactggcctcttatggggggctatgaaatctaccccaa  c.2889-181

.         .         .         .         .         .           g.39252
gcagaaaagattggggtcctacgtggaagggttgcagggacctaagaggctggggtggaa  c.2889-121

.         .         .         .         .         .           g.39312
gggaagaggaggggcctcagacaggacctgacttctgtgccttgtctctgccccaccctg  c.2889-61

.         .         .         .         .         .           g.39372
gggctgaatgaggggctgtgactgtgactggaggtcttacccttgctctttgcctcctag  c.2889-1


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