class II, major histocompatibility complex, transactivator (CIITA) - 1980 nt intron 15 reference sequence

(intronic numbering for coding DNA Reference Sequence)
         .         .         .         .         .         .  g.40322
gtgagtgagctgggcctgcccttcctgctgaatcgggcccccaaagtccggctgactttt  c.3062+60

         .         .         .         .         .         .  g.40382
tcaaaattaatttaaatttgtttttttagacaagggctcgctgtgtcacccaggctagaa  c.3062+120

         .         .         .         .         .         .  g.40442
tatagtgctatgatcatacctctgcagccttgaactcctggcctcaaggaatctcctcac  c.3062+180

         .         .         .         .         .         .  g.40502
ctccgcttcccaaagtgctgggattataggtgtgacttaccatgcccagccccagtggat  c.3062+240

         .         .         .         .         .         .  g.40562
tcatccattcactcattcacctattcaatcagccattcatccttccattcaatgattcat  c.3062+300

         .         .         .         .         .         .  g.40622
ccattcacttatgcagtcatttctttactccctcatccaaccgctcactcaatcatttct  c.3062+360

         .         .         .         .         .         .  g.40682
ttacttacccaaccatttattaatttaatcaacaaatatttaaggaggacctactatgtg  c.3062+420

         .         .         .         .         .         .  g.40742
caggcacctttctaggccctggagacccagctttaaacaaaacaaataaatcccctgacc  c.3062+480

         .         .         .         .         .         .  g.40802
tcaggaatcttaaattctagtgaggagacacaatgaacaagtaaacaagtcggtaattat  c.3062+540

         .         .         .         .         .         .  g.40862
aaagtatacagtaatgaaaataatgtttggtgacagaaaattatactggggggtgaaata  c.3062+600

         .         .         .         .         .         .  g.40922
ggagagatagattaggatttatcaataaagcattattatcaaaacagtaaaactttttaa  c.3062+660

         .         .         .         .         .         .  g.40982
aaactgttctgggctctgggaagttggagatggataagatacaggaggatcaatgtgatt  c.3062+720

         .         .         .         .         .         .  g.41042
ttttttctttttttcagacaaggtctcgctctgtcacccagggtggagtgcagtggtgta  c.3062+780

         .         .         .         .         .         .  g.41102
atcatggctcactgcagcctcaatctcctaggctcaagcaatcctcccatctcaaccttc  c.3062+840

         .         .         .         .         .         .  g.41162
tgagtagctgggacaggtgcatgccaccacgtcccgctaatttttgtatttttttgtaga  c.3062+900

         .         .         .         .         .         .  g.41222
gacgtggtttcaccacgttgcccaggctggtcttgaacttctgagctcaagccatcctcc  c.3062+960

         .         .         .  g.41252
tgcctctgcctcccaaagtactgggattac  c.3062+990

--------------------- middle of intron ---------------------
                  g.41253     .         .         .           g.41282
                  c.3063-990  aggcatgagtcactgtgcctggttcaatgg  c.3063-961

.         .         .         .         .         .           g.41342
gattttttttttttttttttgacacggagtctcgctctgtagcccaggctggagtgcagt  c.3063-901

.         .         .         .         .         .           g.41402
ggtacgatctatttattgcaaacttcacctcctgggttcaagcaattctcacacctcagc  c.3063-841

.         .         .         .         .         .           g.41462
ctcccaagtagctggaattacaggcatgcaccactacacccaactaatttttgtattttt  c.3063-781

.         .         .         .         .         .           g.41522
agtagagacggggtttcaccaggttggccaggctggtcttgaactcctgacctcaagtga  c.3063-721

.         .         .         .         .         .           g.41582
tccgcccacctcagcctcccaaagtgctgggattaccggcatgagccaccacgcccagtt  c.3063-661

.         .         .         .         .         .           g.41642
caacatgattttttactgaacctagaggatatcaaaatcttcccacactccccctcacaa  c.3063-601

.         .         .         .         .         .           g.41702
ccaaggtcttaggatggccaaataatttaccggaatttacttagcaatttccttaattgt  c.3063-541

.         .         .         .         .         .           g.41762
aggactgtgggacttctccagtaatttctagtgtcctaggtaacactgtaagctagattt  c.3063-481

.         .         .         .         .         .           g.41822
cttctccttagtccttccgtccccctctttcttacccgccaccccacttaagtatttatt  c.3063-421

.         .         .         .         .         .           g.41882
gagcacctactatgtgcctggcagtgctctaggcacagggatacagtaatgagcaaaaca  c.3063-361

.         .         .         .         .         .           g.41942
gacacagccctgctccatgtgaagcccacaacccggcagaaaggattacacagccattaa  c.3063-301

.         .         .         .         .         .           g.42002
acaaataatgccaacacttatttcattatagtgctgaaaagtggcgcagagggaaaagag  c.3063-241

.         .         .         .         .         .           g.42062
gggatgttgtaaagtcatgggacaggtgggggcaggagggtgcactctccctcccatcca  c.3063-181

.         .         .         .         .         .           g.42122
cctcctcatccctgccctcccacttggccacaggacctaacagtatcctcctatttaccg  c.3063-121

.         .         .         .         .         .           g.42182
agaggtagcttaagtctgtcgacagcgccattcacagcctatgacccagaactctccttg  c.3063-61

.         .         .         .         .         .           g.42242
aggtcaaagtgaggcatgcaagtttggtcctgagccctccccctcactgtgtccccgcag  c.3063-1