class II, major histocompatibility complex, transactivator (CIITA) - 3640 nt intron 16 reference sequence

(intronic numbering for coding DNA Reference Sequence)


         .         .         .         .         .         .  g.42389
gtgagtggggccccggataccggtcaggtgctgagctggggggctgcagagcgcagggaa  c.3149+60

         .         .         .         .         .         .  g.42449
cccacatcgtgctggctgcaggggacactgagaccctagaagcaatcaccacagccctga  c.3149+120

         .         .         .         .         .         .  g.42509
acaaaaggattagcgggacgtggtgaaagaaactctgagcaagtcagttattcattccta  c.3149+180

         .         .         .         .         .         .  g.42569
gccgctgttttcttacctggaaaatgggaaccatcctaatggtctatgtaagcacttgtc  c.3149+240

         .         .         .         .         .         .  g.42629
acaatgccaggttctgttatgcaataaatattgctccttttcccccagggatggcgggac  c.3149+300

         .         .         .         .         .         .  g.42689
caggctttttccggaacctaggggtggtggcttctggaaggctaaccacgtacgtcagct  c.3149+360

         .         .         .         .         .         .  g.42749
tttgccggccttgtcacttacatgccggtcagtgtttcactgccaccttctggtaggcct  c.3149+420

         .         .         .         .         .         .  g.42809
tggcatagcacctcttgcttttgagtgacttccatccaggccctggtgtggtcccagagg  c.3149+480

         .         .         .         .         .         .  g.42869
taatgagcggactgagcttggaccagagccccagtcatccaactcagcattaccagctct  c.3149+540

         .         .         .         .         .         .  g.42929
tcttactcgccagactgagagaaactgctctcctcttcgccagagctcttcacttactga  c.3149+600

         .         .         .         .         .         .  g.42989
ggacaaccagagtcagattcccaggaaagatggcatttggtcccttattatttatttatt  c.3149+660

         .         .         .         .         .         .  g.43049
tttaatttttttaatttctgtttttgagatggagtctcgctctgtcacccaggctggagt  c.3149+720

         .         .         .         .         .         .  g.43109
gaagtggtgtgatctcagctcactgcaacttctgcccccccccaggttcaagctattcgc  c.3149+780

         .         .         .         .         .         .  g.43169
ctgcctcagtgctccgagtagctgggattataggcgcccaccaccacgtccagctagttt  c.3149+840

         .         .         .         .         .         .  g.43229
ttatatttttagtagagacagggtttcgccatgttggccaggctggtctcaaactcctga  c.3149+900

         .         .         .         .         .         .  g.43289
tctcaggtgatccacctgcctcggcctcccaaagtgagtactaggattacaggcgtgagc  c.3149+960

         .         .         .         .         .         .  g.43349
caccatgcccggccaacttatttatttatttatttatttatttatttggagatggggtct  c.3149+1020

         .         .         .         .         .         .  g.43409
cacccaggttgtagtgcaggggtgcaatgatggctcactacagcctcgactacctggact  c.3149+1080

         .         .         .         .         .         .  g.43469
gaagcgaacctcccacctcagccttccaagtagctgggtcctataccctcctgagccttg  c.3149+1140

         .         .         .         .         .         .  g.43529
ttaatttcttcccagcatgatcactgttttacaatattttatttatgtaggtgcttactt  c.3149+1200

         .         .         .         .         .         .  g.43589
cttgctatgcaaagaaactcagaagcaaaaatagaatctgtctggttcataattgtgcta  c.3149+1260

         .         .         .         .         .         .  g.43649
aaaactagagatacaagtatgaactagacagatgtcgttcttgcttttgagtttctttgc  c.3149+1320

         .         .         .         .         .         .  g.43709
gtagtaggaattaggcacatacataaataaaatattgtaaaacagtgattcatgctggga  c.3149+1380

         .         .         .         .         .         .  g.43769
aggaaactaacaagccccaggagggtacaggacttctggggagatgattcttccgtggga  c.3149+1440

         .         .         .         .         .         .  g.43829
agctctaggggaaaaggactctaggaagaaagaacagcaggtgcaaaggccctaagtggg  c.3149+1500

         .         .         .         .         .         .  g.43889
aaaaggggctgtgttttaagggtcagaagggccactgtggctgtgtgtagtgaatgaggg  c.3149+1560

         .         .         .         .         .         .  g.43949
acagaggctgggcaatggtggaagtaggggaggtcaggggaatccagatcacacagggag  c.3149+1620

         .         .         .         .         .         .  g.44009
gcccttgtgggtcacaagaggtatttgcagtttttcagtgtgaatggaaaagtaggtggg  c.3149+1680

         .         .         .         .         .         .  g.44069
cctgggaaggcgacacttgatctgatttacacttttcttttttcttttcttttctttttg  c.3149+1740

         .         .         .         .         .         .  g.44129
agaccaagtctcactttattgcccaggctaaggtgcagtggcatgatctcagctcactgc  c.3149+1800

         .         .  g.44149
aagcactgcctcctgggttc  c.3149+1820

--------------------- middle of intron ---------------------
                           g.44150      .         .           g.44169
                           c.3150-1820  aagtgattctcatgcctcag  c.3150-1801

.         .         .         .         .         .           g.44229
cctcccaagtagctgggattacagatgcccgccaccacaccaggctatttttgtgttttc  c.3150-1741

.         .         .         .         .         .           g.44289
agtagagacagggcttcgccatgtggcccagactggtcttgaaatcctgggcccaagcga  c.3150-1681

.         .         .         .         .         .           g.44349
tccacccacctcagccttccaaagtgctgggattacgggtgtgagccaccatgcccagcc  c.3150-1621

.         .         .         .         .         .           g.44409
tgatttaccctttaagaaacatcatatttcatggaatctaagatgccatccattgtaaga  c.3150-1561

.         .         .         .         .         .           g.44469
ccccaatatgaggccaaaatgcaaactgtgacacgctattggttataagacacatcctga  c.3150-1501

.         .         .         .         .         .           g.44529
tctcaatgatattcaaatggtgacatatatgtcttggcatcgatgaaatatggtcagatt  c.3150-1441

.         .         .         .         .         .           g.44589
actctccctgtggggtggaggaagggtctccagggttcagagattgcaaaacccccatct  c.3150-1381

.         .         .         .         .         .           g.44649
agtttctgcactggtaccggccgacccgtgatgtgagttgatttagcctgaatccacttg  c.3150-1321

.         .         .         .         .         .           g.44709
gcagcagtgtaaacctgctgcatttatttatttttttctttttttttcgagacagagttt  c.3150-1261

.         .         .         .         .         .           g.44769
cgctcttgttgccaaggctggagtgcagtctcagttcactgcaactccgcctcccgagtt  c.3150-1201

.         .         .         .         .         .           g.44829
caagcaattctcctgcctcagcctctcaagtagctgggagtataggcatgtgccatcaca  c.3150-1141

.         .         .         .         .         .           g.44889
cccggctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtct  c.3150-1081

.         .         .         .         .         .           g.44949
caaactcccgaccttaggtgatccacccgcctcggcctccaaagtgttaggattacaggc  c.3150-1021

.         .         .         .         .         .           g.45009
gtgagccactgcacctgctgcttttatatgcagccctgcaagggagttctgaggctgaat  c.3150-961

.         .         .         .         .         .           g.45069
catggcaaagtcatggccctgaaatcatacccgcagcagcacctgacctgttaaaaggct  c.3150-901

.         .         .         .         .         .           g.45129
gcttggtgtcgagtaaacagctgaagttggcatcagtgacactcatcatgctattttcac  c.3150-841

.         .         .         .         .         .           g.45189
tgctactaatgctggttgtgaatatgctgcagaaactggagctggtccagtgactggctt  c.3150-781

.         .         .         .         .         .           g.45249
tttctcttcctgcccccagtgctggtcacaccctctatgttaactcatgcgaccctcacc  c.3150-721

.         .         .         .         .         .           g.45309
aatgttcctgtgatgtagtcagaaccatagctaacatttagttcattctaggcaccaagg  c.3150-661

.         .         .         .         .         .           g.45369
catgttctaaatgttatatcagcattgattcatttactcctccccacaatgactctatca  c.3150-601

.         .         .         .         .         .           g.45429
tgcccattttacagatgggcaaactgagtctcagaagagttgagtagcttgcccaaggtc  c.3150-541

.         .         .         .         .         .           g.45489
acataggcagtaagaggcatagctgggatttgaacttgggaagttgttctgacagtttcc  c.3150-481

.         .         .         .         .         .           g.45549
acacagtaaggcaagaaatgacttccttttagtcctgctgttttcctgggctcactgttt  c.3150-421

.         .         .         .         .         .           g.45609
gaccacagagaagtggtctcaactctctgggtcttggtttgcctgtctttaaaatggggc  c.3150-361

.         .         .         .         .         .           g.45669
agtaatcccagtaggtggtgactcccacggggctgacctccaggctgcaggggacactga  c.3150-301

.         .         .         .         .         .           g.45729
gatcctagaagcaatcaccacagccctgaacaagagaactagtgggacctggggacagaa  c.3150-241

.         .         .         .         .         .           g.45789
actttgagcaagtcacttattcattcctagcctctattttcatatctagaaaatgggaac  c.3150-181

.         .         .         .         .         .           g.45849
catcccaatggcctatgtaagtacttggcacaatgccaggctctgttgtgcaataaatat  c.3150-121

.         .         .         .         .         .           g.45909
tgattccttcccccagggatagtgggaccaggctttttctggaatctagggatggtggct  c.3150-61

.         .         .         .         .         .           g.45969
tctggaaggctgaccatgcacaggcctccaatccctccccctggcctctgtttccgacag  c.3150-1


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