recombination activating gene 1 (RAG1) - 5168 nt intron 01 reference sequence

(intronic numbering for coding DNA Reference Sequence)


         .         .         .         .         .         .  g.1170
gtaacactcatacttttcatgccttgagccaaaatatttattacatttttatgtttctaa  c.-15+60

         .         .         .         .         .         .  g.1230
ctagaagtgcttgagctttttttccttccaggtgatgaggggatggaatgagcaaagcta  c.-15+120

         .         .         .         .         .         .  g.1290
catcaatttttttttaatgtatgaaaataaaaaaggtacaagaggccaagtttagggcca  c.-15+180

         .         .         .         .         .         .  g.1350
ctgaaggttcatagaaagatgcaaaatatctgaattactataaatgaatgctattgtcag  c.-15+240

         .         .         .         .         .         .  g.1410
aggaaaggtttaaggagtgcttcttgaatgaatgtgtacaaatcagcagaaggtaaggtg  c.-15+300

         .         .         .         .         .         .  g.1470
tgagactcttggaaatgaatactggtagttcaggtgagaaaaataatcaggaacataata  c.-15+360

         .         .         .         .         .         .  g.1530
gggtgggaggaaatgtatggtttcccaggtattaacaagtattgccaggcatttcctgaa  c.-15+420

         .         .         .         .         .         .  g.1590
ctagattggcctaagtaggagaccaatgtttctcaaaatattcactcattttagaatcac  c.-15+480

         .         .         .         .         .         .  g.1650
tgaatgtttaaaaatgcaatttctggattccttcccaaacagccagactctttgggacct  c.-15+540

         .         .         .         .         .         .  g.1710
gatgatctgcatttctttttaaaaacaaactcgctcatgattctgatttgtattaatttt  c.-15+600

         .         .         .         .         .         .  g.1770
gagaattgccatggtagagaccctgctttgaggttatgttcttgagtcaggattcctggc  c.-15+660

         .         .         .         .         .         .  g.1830
cagggattgtgatgatatatttctctttctgaagtggttcatgcaagaggttgtctgaag  c.-15+720

         .         .         .         .         .         .  g.1890
gaagagcaagaattgtagtgttattttgtggatacttgagacttataaaaaggcttttta  c.-15+780

         .         .         .         .         .         .  g.1950
ttttgtcacatttttgatacatgatgtttggcaaaaaacagacgatagtatttgcagagt  c.-15+840

         .         .         .         .         .         .  g.2010
gaatgaataagtggaacaggtgtgataatgagaggtcacacttgagcacacagttattac  c.-15+900

         .         .         .         .         .         .  g.2070
ttggaaattgtgtacagactaagttgaagatgttaggagggaagattgtgggccaagtaa  c.-15+960

         .         .         .         .         .         .  g.2130
cggggtgtatgtgtgtgggtatagggtgggcagctgggatggaaatggggggctgctgct  c.-15+1020

         .         .         .         .         .         .  g.2190
gctgctgcaccctggcctcctgaactaatgatatcactcaccagaaactactgttcctgc  c.-15+1080

         .         .         .         .         .         .  g.2250
actgtccaagccaccccaaactagtttgtcaaaatgaatctgtgctgtgtggagggaggc  c.-15+1140

         .         .         .         .         .         .  g.2310
acgcctgtagctctgatgtcagatggcaatgtcgagatggcagtggccggtggggacagg  c.-15+1200

         .         .         .         .         .         .  g.2370
gctgagccagcaccaaccactcagcctttgagatcccgaggctggtctactgctgagacc  c.-15+1260

         .         .         .         .         .         .  g.2430
ttttgttagaagagaggagatcaagcatttgcaaggtttctgagtgtcaaaatatgaatc  c.-15+1320

         .         .         .         .         .         .  g.2490
caagataactctttcacaatcctaacttcatgctgtctacaggtccatattttagcctgc  c.-15+1380

         .         .         .         .         .         .  g.2550
tttctccatgttcatccgaaaagaaagaaaagctaagggtggtggtcatatttgaaatta  c.-15+1440

         .         .         .         .         .         .  g.2610
gccagatcttaagtttttctgggggaaatttagaagaaaatatggaaaagtgactatgag  c.-15+1500

         .         .         .         .         .         .  g.2670
cacatatacagctagtctttaaaacagttttatccaaaataaatgtatcacaaaattaat  c.-15+1560

         .         .         .         .         .         .  g.2730
aaaaatagttacttgcttgttttgaataattcaaatgatacaaaaattaataaaataaaa  c.-15+1620

         .         .         .         .         .         .  g.2790
agtgcaaaaggccctcttatcaatgccaattctatttttttcagaaattaaacactgtta  c.-15+1680

         .         .         .         .         .         .  g.2850
agattttagtgtgtatcctttcagaattcctgtgatttcatatatgtacaaatacaaacg  c.-15+1740

         .         .         .         .         .         .  g.2910
tatctacataaagggaatcctactatacttgctattgtcattctattctctgctttttca  c.-15+1800

         .         .         .         .         .         .  g.2970
tgtgagcatctttccatgtcactgatgcatacagaaattgcacatatgcatcagtgcata  c.-15+1860

         .         .         .         .         .         .  g.3030
cagaaaattaaattttctgcatggttttccactgtatgtctggaccatagtttatttaat  c.-15+1920

         .         .         .         .         .         .  g.3090
aataatgccctttgggtaattatttatattgtttcctgctttttcaaagtaacagctttt  c.-15+1980

         .         .         .         .         .         .  g.3150
gaaacaaatctctctctgtctttatataaatattgttgcattcctgtggaaatgtttcta  c.-15+2040

         .         .         .         .         .         .  g.3210
ttggataacttcccaaaaggagatttattgcatcaaagataatatattcaaaaattttaa  c.-15+2100

         .         .         .         .         .         .  g.3270
agatattgctaaattgtctagtaggtattttataccaatttatactcctcccaagaatgt  c.-15+2160

         .         .         .         .         .         .  g.3330
atggagatatcttaatttctccatgccttcattaatgctgaaccatataagtagttttaa  c.-15+2220

         .         .         .         .         .         .  g.3390
tctttgctaattgaatagataaaaaatatctaatctaagtctagttcttaaaagttctat  c.-15+2280

         .         .         .         .         .         .  g.3450
cttctaccaaaagtaatacacgtctattttagggagtaaaaatcacaagtaaggataaaa  c.-15+2340

         .         .         .         .         .         .  g.3510
aatagtgcagcaataaacacaggagtgtagatgtctctgaacatactgatttaacttcct  c.-15+2400

         .         .         .         .         .         .  g.3570
ttggataaatacccagtagtaggactgctggatcatataataattctatctttagttttt  c.-15+2460

         .         .         .         .         .         .  g.3630
ttgaggacctccatactattcttcatagtggctgtactaatttacattcctaccaactgt  c.-15+2520

         .         .         .         .         .         .  g.3690
gtatgaaggttcccttttctctacatccttgccagcattcattattgcttgtcatttgga  c.-15+2580

      g.3694
taca  c.-15+2584

--------------------- middle of intron ---------------------
                                            g.3695            g.3698
                                            c.-14-2584  atct  c.-14-2581

.         .         .         .         .         .           g.3758
attttaactggggtgagatgacatctcattgtagttttgatatgcatttctctgatgatc  c.-14-2521

.         .         .         .         .         .           g.3818
agtggtgttgagcaccttttcatatacctgtttgccatttgtatgtcttcctttgagaaa  c.-14-2461

.         .         .         .         .         .           g.3878
tgtctattcagatattttacctattttaaaatcggattattagattgtttcctgtagagt  c.-14-2401

.         .         .         .         .         .           g.3938
tgtttgagctccttgtatattctggttattaatctcttgtcagatgcatagcttacaaat  c.-14-2341

.         .         .         .         .         .           g.3998
attttctcccatcatgtggattgtgtcttcactttgtggattgtttactttgctgtgcag  c.-14-2281

.         .         .         .         .         .           g.4058
aagcttttaacttgatgcaatcccatttgtccacttttgctttggttgccttccacagga  c.-14-2221

.         .         .         .         .         .           g.4118
gtatttaaataaatgtagtttggtagattttggtatagtaatgcaggccagtgggagtca  c.-14-2161

.         .         .         .         .         .           g.4178
ggggagaaatgtgtagggaagtgagatagttctaaggatcctacaaacatgccttatgat  c.-14-2101

.         .         .         .         .         .           g.4238
tgacttactcaatgtgaaagtcaatattaaacttgatgagctctagagatggtcatgcat  c.-14-2041

.         .         .         .         .         .           g.4298
tttaaaaagaattactcaaaatattgtcttggaataccagagagcaagtgctttaagtat  c.-14-1981

.         .         .         .         .         .           g.4358
aggctgggaagtaaaatgctaaaggaatgagaaggcatttggggttgagttcaacctaag  c.-14-1921

.         .         .         .         .         .           g.4418
aggcaggggagccacagggaaagacctagcacctgccacagaagagaattaggaagcaga  c.-14-1861

.         .         .         .         .         .           g.4478
attgaactataagcaattttgaggtgttcgttgggctgcagttgaaatattttttgaggt  c.-14-1801

.         .         .         .         .         .           g.4538
taatgagacatttgaaatggccgtgtattgtttaactcttgcatagtcctgcatagggaa  c.-14-1741

.         .         .         .         .         .           g.4598
caatctaataggatttctctgtgaatcaagtcttagaaatttgcttttaatttttatgaa  c.-14-1681

.         .         .         .         .         .           g.4658
aaacgcccatttctttgtttttgagacagagtcctgctctgtcatccaggctgggttgca  c.-14-1621

.         .         .         .         .         .           g.4718
gtggcgtgatcttggcccactgcaatctctgcctcctgggttcaggcaattttcctgtct  c.-14-1561

.         .         .         .         .         .           g.4778
cagcctcccgagtagctgggatttcaagtgcctgccaccatgcccggctaaatttttttg  c.-14-1501

.         .         .         .         .         .           g.4838
tatttttggtacagatggagtatcaccatgttggccaggctggtctcgaactcctgacct  c.-14-1441

.         .         .         .         .         .           g.4898
caagtgattcaccagccttgacctcccaaagtgttgggatcacaggcatgagccactgtg  c.-14-1381

.         .         .         .         .         .           g.4958
cctgtgccccaaaacaccaatttctgatgtgtgatgcatgtaagatagaacaaacttcag  c.-14-1321

.         .         .         .         .         .           g.5018
taaagcggggacttgaaaagaggctttggtaacagctgtcagcattaacccttgcccctc  c.-14-1261

.         .         .         .         .         .           g.5078
cgtacctcctaatcccacccctgctcaaagtatgttcatctgagaatttgtctccataac  c.-14-1201

.         .         .         .         .         .           g.5138
tatgtgactataaaaattctcatcgattttgttagttgatcaattgagggaaaaacatat  c.-14-1141

.         .         .         .         .         .           g.5198
gttacttgatataactggtgggtcaaaagaattaacccaggcaaatttgagataggtgga  c.-14-1081

.         .         .         .         .         .           g.5258
tgggatgatggattgaaaatacagctgctctctttccaatcatgtactaagtaatttggg  c.-14-1021

.         .         .         .         .         .           g.5318
aaagattgatctaattgggtctagagagtacacttcacatggcattgtttgacttttttt  c.-14-961

.         .         .         .         .         .           g.5378
ctgcatcgctagcgatctgtgcattacaactcaaatcagtcgggtttcctggcatatgta  c.-14-901

.         .         .         .         .         .           g.5438
attgccaatgttttttaccagaagagaaacattactcccacctcttcttattatgttaca  c.-14-841

.         .         .         .         .         .           g.5498
aactatagtgctaatgaccatcgaccaacagtgactttcaggatgacctgtgtgagtttt  c.-14-781

.         .         .         .         .         .           g.5558
atctgaaaccatgtgaatttttcatcttaaaagtcccttagaatctcagtctatgtacac  c.-14-721

.         .         .         .         .         .           g.5618
tcaggtttgttgcaggtttagagttccgtgttttttgtttctaatgtagacacagcctta  c.-14-661

.         .         .         .         .         .           g.5678
taatttacaacagcattcactaattaaaattgtaagcataattactatccacgatactta  c.-14-601

.         .         .         .         .         .           g.5738
ttattagtttgcattcataaagctcaaaattcacttcatcctttcaagtagtgaataatt  c.-14-541

.         .         .         .         .         .           g.5798
agtttctttgggtttgcagctttatcatccttttatgacccatttggaagaaataaacaa  c.-14-481

.         .         .         .         .         .           g.5858
ccaaccccctggaagactgctttaaaaagctggaaatacattgtccagctagtacaatga  c.-14-421

.         .         .         .         .         .           g.5918
ggctaatacaatgtggaaaatattacttttctttgattttagtagcctgtttatctttac  c.-14-361

.         .         .         .         .         .           g.5978
atttactgaacaaataactattgagcacctaatgtatactgggacccttggggaggcaaa  c.-14-301

.         .         .         .         .         .           g.6038
gatgaatcaaagattctgtccttaaagaccttaaggtttttgtggaaggaaataaaactt  c.-14-241

.         .         .         .         .         .           g.6098
tacatgtatatatttaagcacttatatgtgtgtaacaggtataagtaaccataaacactg  c.-14-181

.         .         .         .         .         .           g.6158
tcagaagaggaaataactctatgatcagcacctaacatgatatattaaggtagaagattt  c.-14-121

.         .         .         .         .         .           g.6218
aatacatatcttttggaatacatgaataaataattgaatgtatttatttttattatttat  c.-14-61

.         .         .         .         .         .           g.6278
aagatacatcagtgggatattgatattggtcttaatatgacttgttttcattgttctcag  c.-14-1


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