(used for mutation description)
(last modified May 1, 2014)
This file was created to facilitate the description of sequence variants in the TLR3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000004.11, covering TLR3 transcript NM_003265.2.
(upstream sequence)
. . . . g.1041
cactttcgagagtgccgtctatttgccacacacttccctga c.-61
. . . . . . | 02 g.8465
tgaaatgtctggatttggactaaagaaaaaaggaaaggctagcagtcatccaa | cagaatc c.-1
. . . . . . g.8525
ATGAGACAGACTTTGCCTTGTATCTACTTTTGGGGGGGCCTTTTGCCCTTTGGGATGCTG c.60
M R Q T L P C I Y F W G G L L P F G M L p.20
. . . . . . g.8585
TGTGCATCCTCCACCACCAAGTGCACTGTTAGCCATGAAGTTGCTGACTGCAGCCACCTG c.120
C A S S T T K C T V S H E V A D C S H L p.40
. . . . . . g.8645
AAGTTGACTCAGGTACCCGATGATCTACCCACAAACATAACAGTGTTGAACCTTACCCAT c.180
K L T Q V P D D L P T N I T V L N L T H p.60
. . . . . . g.8705
AATCAACTCAGAAGATTACCAGCCGCCAACTTCACAAGGTATAGCCAGCTAACTAGCTTG c.240
N Q L R R L P A A N F T R Y S Q L T S L p.80
. . . . . . g.8765
GATGTAGGATTTAACACCATCTCAAAACTGGAGCCAGAATTGTGCCAGAAACTTCCCATG c.300
D V G F N T I S K L E P E L C Q K L P M p.100
. . . . . . g.8825
TTAAAAGTTTTGAACCTCCAGCACAATGAGCTATCTCAACTTTCTGATAAAACCTTTGCC c.360
L K V L N L Q H N E L S Q L S D K T F A p.120
. . . . . . g.8885
TTCTGCACGAATTTGACTGAACTCCATCTCATGTCCAACTCAATCCAGAAAATTAAAAAT c.420
F C T N L T E L H L M S N S I Q K I K N p.140
. . | 03 . . . . g.10724
AATCCCTTTGTCAAGCAGAAG | AATTTAATCACATTAGATCTGTCTCATAATGGCTTGTCA c.480
N P F V K Q K | N L I T L D L S H N G L S p.160
. . . . . . g.10784
TCTACAAAATTAGGAACTCAGGTTCAGCTGGAAAATCTCCAAGAGCTTCTATTATCAAAC c.540
S T K L G T Q V Q L E N L Q E L L L S N p.180
. . . . . . g.10844
AATAAAATTCAAGCGCTAAAAAGTGAAGAACTGGATATCTTTGCCAATTCATCTTTAAAA c.600
N K I Q A L K S E E L D I F A N S S L K p.200
. . . | 04 . . . g.14192
AAATTAGAGTTGTCATCGAATCAAATTAAAGAG | TTTTCTCCAGGGTGTTTTCACGCAATT c.660
K L E L S S N Q I K E | F S P G C F H A I p.220
. . . . . . g.14252
GGAAGATTATTTGGCCTCTTTCTGAACAATGTCCAGCTGGGTCCCAGCCTTACAGAGAAG c.720
G R L F G L F L N N V Q L G P S L T E K p.240
. . . . . . g.14312
CTATGTTTGGAATTAGCAAACACAAGCATTCGGAATCTGTCTCTGAGTAACAGCCAGCTG c.780
L C L E L A N T S I R N L S L S N S Q L p.260
. . . . . . g.14372
TCCACCACCAGCAATACAACTTTCTTGGGACTAAAGTGGACAAATCTCACTATGCTCGAT c.840
S T T S N T T F L G L K W T N L T M L D p.280
. . . . . . g.14432
CTTTCCTACAACAACTTAAATGTGGTTGGTAACGATTCCTTTGCTTGGCTTCCACAACTA c.900
L S Y N N L N V V G N D S F A W L P Q L p.300
. . . . . . g.14492
GAATATTTCTTCCTAGAGTATAATAATATACAGCATTTGTTTTCTCACTCTTTGCACGGG c.960
E Y F F L E Y N N I Q H L F S H S L H G p.320
. . . . . . g.14552
CTTTTCAATGTGAGGTACCTGAATTTGAAACGGTCTTTTACTAAACAAAGTATTTCCCTT c.1020
L F N V R Y L N L K R S F T K Q S I S L p.340
. . . . . . g.14612
GCCTCACTCCCCAAGATTGATGATTTTTCTTTTCAGTGGCTAAAATGTTTGGAGCACCTT c.1080
A S L P K I D D F S F Q W L K C L E H L p.360
. . . . . . g.14672
AACATGGAAGATAATGATATTCCAGGCATAAAAAGCAATATGTTCACAGGATTGATAAAC c.1140
N M E D N D I P G I K S N M F T G L I N p.380
. . . . . . g.14732
CTGAAATACTTAAGTCTATCCAACTCCTTTACAAGTTTGCGAACTTTGACAAATGAAACA c.1200
L K Y L S L S N S F T S L R T L T N E T p.400
. . . . . . g.14792
TTTGTATCACTTGCTCATTCTCCCTTACACATACTCAACCTAACCAAGAATAAAATCTCA c.1260
F V S L A H S P L H I L N L T K N K I S p.420
. . . . . . g.14852
AAAATAGAGAGTGATGCTTTCTCTTGGTTGGGCCACCTAGAAGTACTTGACCTGGGCCTT c.1320
K I E S D A F S W L G H L E V L D L G L p.440
. . . . . . g.14912
AATGAAATTGGGCAAGAACTCACAGGCCAGGAATGGAGAGGTCTAGAAAATATTTTCGAA c.1380
N E I G Q E L T G Q E W R G L E N I F E p.460
. . . . . . g.14972
ATCTATCTTTCCTACAACAAGTACCTGCAGCTGACTAGGAACTCCTTTGCCTTGGTCCCA c.1440
I Y L S Y N K Y L Q L T R N S F A L V P p.480
. . . . . . g.15032
AGCCTTCAACGACTGATGCTCCGAAGGGTGGCCCTTAAAAATGTGGATAGCTCTCCTTCA c.1500
S L Q R L M L R R V A L K N V D S S P S p.500
. . . . . . g.15092
CCATTCCAGCCTCTTCGTAACTTGACCATTCTGGATCTAAGCAACAACAACATAGCCAAC c.1560
P F Q P L R N L T I L D L S N N N I A N p.520
. . . . . . g.15152
ATAAATGATGACATGTTGGAGGGTCTTGAGAAACTAGAAATTCTCGATTTGCAGCATAAC c.1620
I N D D M L E G L E K L E I L D L Q H N p.540
. . . . . . g.15212
AACTTAGCACGGCTCTGGAAACACGCAAACCCTGGTGGTCCCATTTATTTCCTAAAGGGT c.1680
N L A R L W K H A N P G G P I Y F L K G p.560
. . . . . . g.15272
CTGTCTCACCTCCACATCCTTAACTTGGAGTCCAACGGCTTTGACGAGATCCCAGTTGAG c.1740
L S H L H I L N L E S N G F D E I P V E p.580
. . . . . . g.15332
GTCTTCAAGGATTTATTTGAACTAAAGATCATCGATTTAGGATTGAATAATTTAAACACA c.1800
V F K D L F E L K I I D L G L N N L N T p.600
. . . . . . g.15392
CTTCCAGCATCTGTCTTTAATAATCAGGTGTCTCTAAAGTCATTGAACCTTCAGAAGAAT c.1860
L P A S V F N N Q V S L K S L N L Q K N p.620
. . . . . . g.15452
CTCATAACATCCGTTGAGAAGAAGGTTTTCGGGCCAGCTTTCAGGAACCTGACTGAGTTA c.1920
L I T S V E K K V F G P A F R N L T E L p.640
. . . . . . g.15512
GATATGCGCTTTAATCCCTTTGATTGCACGTGTGAAAGTATTGCCTGGTTTGTTAATTGG c.1980
D M R F N P F D C T C E S I A W F V N W p.660
. . . . . . g.15572
ATTAACGAGACCCATACCAACATCCCTGAGCTGTCAAGCCACTACCTTTGCAACACTCCA c.2040
I N E T H T N I P E L S S H Y L C N T P p.680
. . . . . . g.15632
CCTCACTATCATGGGTTCCCAGTGAGACTTTTTGATACATCATCTTGCAAAGACAGTGCC c.2100
P H Y H G F P V R L F D T S S C K D S A p.700
. . . . . . g.15692
CCCTTTGAACTCTTTTTCATGATCAATACCAGTATCCTGTTGATTTTTATCTTTATTGTA c.2160
P F E L F F M I N T S I L L I F I F I V p.720
. . . . . . g.15752
CTTCTCATCCACTTTGAGGGCTGGAGGATATCTTTTTATTGGAATGTTTCAGTACATCGA c.2220
L L I H F E G W R I S F Y W N V S V H R p.740
. . . . . . g.15812
GTTCTTGGTTTCAAAGAAATAGACAGACAGACAGAACAGTTTGAATATGCAGCATATATA c.2280
V L G F K E I D R Q T E Q F E Y A A Y I p.760
. . . . . . g.15872
ATTCATGCCTATAAAGATAAGGATTGGGTCTGGGAACATTTCTCTTCAATGGAAAAGGAA c.2340
I H A Y K D K D W V W E H F S S M E K E p.780
. . . . . . g.15932
GACCAATCTCTCAAATTTTGTCTGGAAGAAAGGGACTTTGAGGCGGGTGTTTTTGAACTA c.2400
D Q S L K F C L E E R D F E A G V F E L p.800
. . . . . . g.15992
GAAGCAATTGTTAACAGCATCAAAAGAAGCAGAAAAATTATTTTTGTTATAACACACCAT c.2460
E A I V N S I K R S R K I I F V I T H H p.820
. . | 05 . . . . g.16524
CTATTAAAAGACCCATTATGCAAAAG | ATTCAAGGTACATCATGCAGTTCAACAAGCTATT c.2520
L L K D P L C K R | F K V H H A V Q Q A I p.840
. . . . . . g.16584
GAACAAAATCTGGATTCCATTATATTGGTTTTCCTTGAGGAGATTCCAGATTATAAACTG c.2580
E Q N L D S I I L V F L E E I P D Y K L p.860
. . . . . . g.16644
AACCATGCACTCTGTTTGCGAAGAGGAATGTTTAAATCTCACTGCATCTTGAACTGGCCA c.2640
N H A L C L R R G M F K S H C I L N W P p.880
. . . . . . g.16704
GTTCAGAAAGAACGGATAGGTGCCTTTCGTCATAAATTGCAAGTAGCACTTGGATCCAAA c.2700
V Q K E R I G A F R H K L Q V A L G S K p.900
. g.16719
AACTCTGTACATTAA c.2715
N S V H X p.904
. . . . . . g.16779
atttatttaaatattcaattagcaaaggagaaactttctcaatttaaaaagttctatggc c.*60
. . . . . . g.16839
aaatttaagttttccataaaggtgttataatttgtttattcatatttgtaaatgattata c.*120
. . . . . . g.16899
ttctatcacaattacatctcttctaggaaaatgtgtctccttatttcaggcctatttttg c.*180
. . . . g.16944
acaattgacttaattttacccaaaataaaacatataagcacgtaa c.*225
(downstream sequence)
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