(used for mutation description)
(last modified May 1, 2014)
This file was created to facilitate the description of sequence variants in the TRAF3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000014.8, covering TRAF3 transcript NM_003300.3.
(upstream sequence)
. . . g.1034
gggagcgcggcgcggccgccgcgtgcgcgagccg c.-181
. . . . . . g.1094
gggttgcagcccagccgggactttccagccggcggcagccgcggcggccgccggctcttc c.-121
. . . . . . g.1154
cccgccccccgccatggggcagcccggggagcagaacgctgcggaccgcggcggaggacg c.-61
. . . . . | 02 . g.93723
cgcccggcgcccctgagccggccgagcggcgacggaccgcgag | aactcctctttcctaaa c.-1
. . . . . . g.93783
ATGGAGTCGAGTAAAAAGATGGACTCTCCTGGCGCGCTGCAGACTAACCCGCCGCTAAAG c.60
M E S S K K M D S P G A L Q T N P P L K p.20
. . . . . . g.93843
CTGCACACTGACCGCAGTGCTGGGACGCCAGTTTTTGTCCCTGAACAAGGAGGTTACAAG c.120
L H T D R S A G T P V F V P E Q G G Y K p.40
. . . . . . g.93903
GAAAAGTTTGTGAAGACCGTGGAGGACAAGTACAAGTGTGAGAAGTGCCACCTGGTGCTG c.180
E K F V K T V E D K Y K C E K C H L V L p.60
. . . . . . g.93963
TGCAGCCCGAAGCAGACCGAGTGTGGGCACCGCTTCTGCGAGAGCTGCATGGCGGCCCTG c.240
C S P K Q T E C G H R F C E S C M A A L p.80
| 03 . . . . . | 04. g.99148
CTGAG | CTCTTCAAGTCCAAAATGTACAGCGTGTCAAGAGAGCATCGTTAAAGATAAG | GTG c.300
L S | S S S P K C T A C Q E S I V K D K | V p.100
. . . . . . g.99208
TTTAAGGATAATTGCTGCAAGAGAGAAATTCTGGCTCTTCAGATCTATTGTCGGAATGAA c.360
F K D N C C K R E I L A L Q I Y C R N E p.120
. . . . | 05 . . g.99897
AGCAGAGGTTGTGCAGAGCAGTTAATGCTGGGACATCTGCTG | GTGCATTTAAAAAATGAT c.420
S R G C A E Q L M L G H L L | V H L K N D p.140
. . . . . . g.99957
TGCCATTTTGAAGAACTTCCATGTGTGCGTCCTGACTGCAAAGAAAAGGTCTTGAGGAAA c.480
C H F E E L P C V R P D C K E K V L R K p.160
. . . . . . g.100017
GACCTGCGAGACCACGTGGAGAAGGCGTGTAAATACCGGGAAGCCACATGCAGCCACTGC c.540
D L R D H V E K A C K Y R E A T C S H C p.180
. . . | 06 . . . g.109740
AAGAGTCAGGTTCCGATGATCGCGCTGCAG | AAACACGAAGACACCGACTGTCCCTGCGTG c.600
K S Q V P M I A L Q | K H E D T D C P C V p.200
. . . . . | 07 . g.113090
GTGGTGTCCTGCCCTCACAAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAG | TTGAGTGCA c.660
V V S C P H K C S V Q T L L R S E | L S A p.220
. . . . . . g.113150
CACTTGTCAGAGTGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTT c.720
H L S E C V N A P S T C S F K R Y G C V p.240
| 08 . . . . . . g.114900
TTTCAG | GGGACAAACCAGCAGATCAAGGCCCACGAGGCCAGCTCCGCCGTGCAGCACGTC c.780
F Q | G T N Q Q I K A H E A S S A V Q H V p.260
. . . | 09 . . g.120803
AACCTGCTGAAGGAGTGGAGCAACTCGCTCGAAAAGAAG | GTTTCCTTGTTGCAGAATGAA c.840
N L L K E W S N S L E K K | V S L L Q N E p.280
. . . . . . g.120863
AGTGTAGAAAAAAACAAGAGCATACAAAGTTTGCACAATCAGATATGTAGCTTTGAAATT c.900
S V E K N K S I Q S L H N Q I C S F E I p.300
. . . . . . g.120923
GAAATTGAGAGACAAAAGGAAATGCTTCGAAATAATGAATCCAAAATCCTTCATTTACAG c.960
E I E R Q K E M L R N N E S K I L H L Q p.320
| 10 . . . . . . g.126836
| CGAGTGATAGACAGCCAAGCAGAGAAACTGAAGGAGCTTGACAAGGAGATCCGGCCCTTC c.1020
| R V I D S Q A E K L K E L D K E I R P F p.340
. . . . . . g.126896
CGGCAGAACTGGGAGGAAGCAGACAGCATGAAGAGCAGCGTGGAGTCCCTCCAGAACCGC c.1080
R Q N W E E A D S M K S S V E S L Q N R p.360
. . . . . | 11 . g.128739
GTGACCGAGCTGGAGAGCGTGGACAAGAGCGCGGGGCAAGTGGCTCGGAACACAG | GCCTG c.1140
V T E L E S V D K S A G Q V A R N T G | L p.380
. . . . . . g.128799
CTGGAGTCCCAGCTGAGCCGGCATGACCAGATGCTGAGTGTGCACGACATCCGCCTAGCC c.1200
L E S Q L S R H D Q M L S V H D I R L A p.400
. . . . . . g.128859
GACATGGACCTGCGCTTCCAGGTCCTGGAGACCGCCAGCTACAATGGAGTGCTCATCTGG c.1260
D M D L R F Q V L E T A S Y N G V L I W p.420
. . . . . . g.128919
AAGATTCGCGACTACAAGCGGCGGAAGCAGGAGGCCGTCATGGGGAAGACCCTGTCCCTT c.1320
K I R D Y K R R K Q E A V M G K T L S L p.440
. . . . . . g.128979
TACAGCCAGCCTTTCTACACTGGTTACTTTGGCTATAAGATGTGTGCCAGGGTCTACCTG c.1380
Y S Q P F Y T G Y F G Y K M C A R V Y L p.460
. . . . . . g.129039
AACGGGGACGGGATGGGGAAGGGGACGCACTTGTCGCTGTTTTTTGTCATCATGCGTGGA c.1440
N G D G M G K G T H L S L F F V I M R G p.480
. . . . . . g.129099
GAATATGATGCCCTGCTTCCTTGGCCGTTTAAGCAGAAAGTGACACTCATGCTGATGGAT c.1500
E Y D A L L P W P F K Q K V T L M L M D p.500
. . . . . . g.129159
CAGGGGTCCTCTCGACGTCATTTGGGAGATGCATTCAAGCCCGACCCCAACAGCAGCAGC c.1560
Q G S S R R H L G D A F K P D P N S S S p.520
. . . . . . g.129219
TTCAAGAAGCCCACTGGAGAGATGAATATCGCCTCTGGCTGCCCAGTCTTTGTGGCCCAA c.1620
F K K P T G E M N I A S G C P V F V A Q p.540
. . . . . . g.129279
ACTGTTCTAGAAAATGGGACATATATTAAAGATGATACAATTTTTATTAAAGTCATAGTG c.1680
T V L E N G T Y I K D D T I F I K V I V p.560
. . g.129306
GATACTTCGGATCTGCCCGATCCCTGA c.1707
D T S D L P D P X p.568
. . . . . . g.129366
taagtagctggggaggtggatttagcagaaggcaactcctctgggggatttgaaccggtc c.*60
. . . . . . g.129426
tgtcttcactgaggtcctcgcgctcagaaaaggaccttgtgagacggaggaagcggcaga c.*120
. . . . . . g.129486
aggcggacgcgtgccggcgggaggagccacgcgtgagcacacctgacacgttttataata c.*180
. . . . . . g.129546
gactagccacacttcactctgaagaattatttatccttcaacaagataaatattgctgtc c.*240
. . . . . . g.129606
agagaaggttttcattttcatttttaaagatctagttaattaaggtggaaaacatatatg c.*300
. . . . . . g.129666
ctaaacaaaagaaacatgatttttcttccttaaacttgaacaccaaaaaaacacacacac c.*360
. . . . . . g.129726
acacacacgtggggatagctggacatgtcagcatgttaagtaaaaggagaatttatgaaa c.*420
. . . . . . g.129786
tagtaatgcaattctgatatcttctttctaaaattcaagagtgcaattttgtttcaaata c.*480
. . . . . . g.129846
cagtatattgtctatttttaaggcctcatctggtctctgttttaataatttgtttgtcag c.*540
. . . . . . g.129906
aagaccctgaagtatatacctaggtcttttttttgaaagtctctaaattcagaatcattt c.*600
. . . . . . g.129966
tttaatttaaagttctacaaataattgttactgcaaacattttattttaaaacgttgata c.*660
. . . . . . g.130026
gactgatatttcttggaagaaaatataaaatatcaaacactggttatcacttgtgatagg c.*720
. . . . . . g.130086
aaagagaatattcaacctgttgttatttctcgttagaaatgtaaaccttcaaatatctgt c.*780
. . . . . . g.130146
cgtagttaatgacacgacttcacaattctgaacggagcctcgctcatggatgctgtgcat c.*840
. . . . . . g.130206
cattttcagatttataattgttttcaccctaaaatagggcatccgttgaactttggagtt c.*900
. . . . . . g.130266
ctaaacaaaatcctgtaggtgtttggattctgccccatgtgttcggacgagctctctgtt c.*960
. . . . . . g.130326
gctgacagcaccggccttcggtctccatgtcaggggtgggcgggtgactgctgagggagg c.*1020
. . . . . . g.130386
cccgcaggtgtgtttctccatcccgtcatcttgctgcatgccgtcaacggtctccgaaag c.*1080
. . . . . . g.130446
caacgttgtgcgtagagctggtggcatacggcccacgtgccttagatgggacatgctgct c.*1140
. . . . . . g.130506
tctccaccctgggtttgcattgagcatcattctagaaagtgctagtttaaccagactttt c.*1200
. . . . . . g.130566
ctctccaccactagatctttgtctctacaagggccctcagacacctctgcacctgctgag c.*1260
. . . . . . g.130626
gggaagccaggctccaccgtcggcttctggagcctccgctgcttaattaccacagattcc c.*1320
. . . . . . g.130686
aaatctctaggccccacgagtgagccgcctggtccaagtacggcctggtcccaccctgag c.*1380
. . . . . . g.130746
ggaggcaggtgtggaacagaagccgagcctctccgtgtccccaccggggccgtgggcacc c.*1440
. . . . . . g.130806
cccacagcccgaagcagaaccctctgagcattccagagaccgctgctcgggggcctgccc c.*1500
. . . . . . g.130866
aggctgaccaacgggcgctcctgaccaccaccctggcgggaagggtggccacggggcccg c.*1560
. . . . . . g.130926
tcgtcccagcctgtgcctgcccagatggcattttctcaactcactgtttactgtctctca c.*1620
. . . . . . g.130986
gtgtccaactgtgattagaagcctggagcctgccccctgcaccccttttgctatgcacca c.*1680
. . . . . . g.131046
cgcttcatggtgctcttaccactgatgggtgctacacgcgacgggtgcttcttaggcaaa c.*1740
. . . . . . g.131106
accaatgtgtgcgaactgtcacacctgtgccactcgcccacaagccgcgcccacaattgg c.*1800
. . . . . . g.131166
ccagctgggccgtgcacgtcagactgcctgcctcggctctccccgtggccgcgcggggac c.*1860
. . . . . . g.131226
agcttggtgggtgcccggtggcccacctgtctctggtgctgccatctgtcctgggtgtgc c.*1920
. . . . . . g.131286
cttcgccccagtgcctgctggaagtgccctccgtcgcacccctgtgccctgagctcccgt c.*1980
. . . . . . g.131346
gaggggcccgccgcgccctttcgcggtcgaagcgttccgttgttcttatctgcctttcct c.*2040
. . . . . . g.131406
ttccccgctctcctgggattactttgggggaatgagtatccttggttctgccctgtgagg c.*2100
. . . . . . g.131466
gagtcgtgtgtccctgctcataaaggaaggacttcctgcagaagctgcggaaaactactg c.*2160
. . . . . . g.131526
ttccctcgaaggtgtcccccacctgaggcctgtcccctacctgccctcaggtagttttcc c.*2220
. . . . . . g.131586
tgaggccaggggttaacaacagggacatccctgcaacttccccttcacaaaatgtataat c.*2280
. . . . . . g.131646
attagatgaaggatatgcaacatcttggtctagtaagaaccgtttcctcccctctgggtt c.*2340
. . . . . . g.131706
gaagtcctggtgtggcccccagaagcagcagtgcgtgtcactgggacgtctccagtagcc c.*2400
. . . . . . g.131766
cttcccaggcagacgctcctggcgggacgccatggggcccacctgagggtcccacagacg c.*2460
. . . . . . g.131826
taacctgagtgacaggagtccttgaggatgggatggcctatgtcacacactttgtccttg c.*2520
. . . . . . g.131886
aacctgagtgatgggggtccttgaggatgggatggcctgtgtcacgcgctttgtctttgt c.*2580
. . . . . . g.131946
gtttggttgtatcggggtctctgttctgagtgtgtcttcctctcatgtactcaacacagt c.*2640
. . . . . . g.132006
gggcagcagcctgggacggcgtcccctctcccggcggcgggcaagccttgcgctgctcca c.*2700
. . . . . . g.132066
ccctcggcctgggcaccctcacttggcgctggccacctgggccagcctggggccatggtc c.*2760
. . . . . . g.132126
tctctgcagctgaggcccagtggccccttgggcagtgatcggccctccccgcatcacagg c.*2820
. . . . . . g.132186
gccctggcagcaagcgggaaatgggggcgcacactgtgtgcttgggggtgctgcttgttt c.*2880
. . . . . . g.132246
accacacatgaccagactcccagcaggacagagctgctcagtactttacagaaaccaact c.*2940
. . . . . . g.132306
gagtcgtttgtgcatgaattaagccggtctgcttccccgtcaccttcgtaacaaaacaac c.*3000
. . . . . . g.132366
gtcccctctcccctcgcctcgagcagtttcttcaggacaccgtggctcgggctgctccct c.*3060
. . . . . . g.132426
gctgccaggcacgctggttggctggcctgggcccggctcacgtgaagggcactggctctt c.*3120
. . . . . . g.132486
gtgaccacactgagccacgtgcaagccgcagccgggcctggaagcctgaccctctggttc c.*3180
. . . . . . g.132546
tagggcttgtcccgcggagcctgcagagctagacgttggggtgtgtccgtgatgatatgg c.*3240
. . . . . . g.132606
gggccaggctgggagtagggcctttctagcagggttgggtggctcagtgagggtgtggaa c.*3300
. . . . . . g.132666
gtgggggacccacggggcctggctttgggactagacatgccagccccagctgggctggag c.*3360
. . . . . . g.132726
ggagcctgagtgagccccgacatacgctgggcctttcagctcgccgtgctctggtgacac c.*3420
. . . . . . g.132786
acaggcggccaggttgggatttgtgtcaattctaggagccatcaagcatgaatgtggttc c.*3480
. . . . . . g.132846
tgtctcctgagcgcaagcctcgccggacccctgggcgaaggcctggacttgcagatgtgt c.*3540
. . . . . . g.132906
gttccctgtgcgggtggacagagggggcccttatgacccacattgcagccccattccacc c.*3600
. . . . . . g.132966
accccttcctccccagagcagtctctgccgagggacagcacctgtgtcccttcgatgcca c.*3660
. . . . . . g.133026
caacagccagttgaacaggggagccctttgctcaggcagcttctcctgcctctccctcct c.*3720
. . . . . . g.133086
ttctccttccctgccccatccccgtgcccttcttggcctgtggcgctggggagccatggt c.*3780
. . . . . . g.133146
gtggcatactggggctcctgctccttgggccacttcctcagcccgggccccacaggccca c.*3840
. . . . . . g.133206
ccacctgccagggctcccactgcactggctgtggcaggaggcttccccatgaccccgtgt c.*3900
. . . . . . g.133266
ggcccagctcggtgaggatgcagttctaggcacagcccctgggacagccagctgcctccc c.*3960
. . . . . . g.133326
agaccacgtcagcctgctccagggtcctcagtcaccctgggccaggggccacgtgtccca c.*4020
. . . . . . g.133386
tggatgtcgaccatgccaacgtcacattccagcaccccttttgcttgatggcgtctggtg c.*4080
. . . . . . g.133446
gtagtcagcatggtggacccacatcctacagccagaggtgatgttggacaaaggaagggg c.*4140
. . . . . . g.133506
agtctggatgggtccttaaacgaccattctgtccgcagcggggtcattccttgtcagccc c.*4200
. . . . . . g.133566
aagggagggccggggagtacactgatcccaacagctgggctgacacctcctttctcccct c.*4260
. . . . . . g.133626
gcacggggaggattggcctgaggaccgtcaccctgtgcacagccccagtagggtggcagt c.*4320
. . . . . . g.133686
gccactgtctccttgggccgttgcaggattgggcgggtgcagactccccttgcgggcccc c.*4380
. . . . . . g.133746
ttgctcaatccccggccctcccagactcctccctctactgggggtaatttgtgtgtcaga c.*4440
. . . . . . g.133806
agggctctggcagagctgtaaaatactgttttttaaaaattttagtccagatctttactt c.*4500
. . . . . . g.133866
attagactgcagaaggagagctagggagagtgggggaagcccccttgcttttgtatctgt c.*4560
. . . . . . g.133926
gaggtgaatgagggtctgtcacccaaatctacttctcagcccatgaccatagttctgttt c.*4620
. . . . . . g.133986
tccgtttgcaaatctcagtagctctgttttctccaaagtagaatgtgcgcaccggggtcc c.*4680
. . . . . . g.134046
tagccaggcgaggtcagtgtcggcaggctacctggtcattattgctgcctcgtccaggct c.*4740
. . . . . . g.134106
gatgctgatggtcacaggcacggtggcatcagggagccgggccagcaggcggcgtgaggc c.*4800
. . . . . . g.134166
ggggccagcagctcactgcaagggcattttccacctgatcctggtgtgccccacatgcgg c.*4860
. . . . . . g.134226
tggcagggcagacgtgtgaagcctcggccgtctcggggctggcaggtgtgcgggtgagga c.*4920
. . . . . . g.134286
ggccccggtggccaagcagagcctgcgtttcatttctcctgctgcactgtgtctagtctg c.*4980
. . . . . . g.134346
tcttgtgaactctcaccgtgaaaagaggctagaagtccaggatcgctgtaccgctcctgt c.*5040
. . . . . . g.134406
aattaggtgatgactggatttgacaacttagtcccctcagacaagtaagataccctccaa c.*5100
. . . . . . g.134466
cagcaaattcaatgacttaattggaaaacacacaagctggcatgatgtccggtgatttct c.*5160
. . . . . . g.134526
gtaagaaatgcctgtaggagaaggtctgtgaagtgtggagggcagtgtcgacgctgcaca c.*5220
. . . . . . g.134586
gcatctgcagattcgcagcctcttctctgccggtgcctctgttcggttctgttacccaaa c.*5280
. . . . . . g.134646
aacaaagaccaaagaaggccaatctctcatttgaccctgtctttttaatctgcctgtttt c.*5340
. . . . . . g.134706
aaaagttgcgtctgtagtagccgcttgctgtgaagacacatcttgacagtccaagtgatt c.*5400
. . . . . . g.134766
ttgtgaccagtgatttgggtcctgttttccgctcttctaagaaaaaacaaaaagaccgtg c.*5460
. . . . . . g.134826
agttattgcccagcaataatcatgttgttactgtgagttagcaacatgcctgacttcctg c.*5520
. . . . . . g.134886
atagcattactgttttctagttttgtttattgtatattatgtgtggttttatttggtatt c.*5580
. . . . . . g.134946
tatttgtgttttgaggtcttgcaatgtttttgtgtttctgatgctaataactaaagtttg c.*5640
. . . . . . g.135006
taagactgtagaatgcaaaactcggagatgctaaactgtcttattagaggaaaataaatc c.*5700
. g.135022
tgattatggagtctca c.*5716
(downstream sequence)
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