cmind-py

cmind-py is a python toolbox for analysis of MRI images. It was developed for analyzing the datasets collected as part of the Cincinnati MR Imaging of NeuroDevelopment (C-MIND) project.

cmind-py is for research only and is not intended for clincal use

Websites

The homepage for the C-MIND project is:

https://research.cchmc.org/c-mind

The data collected is publicly available at the following location:

https://cmind.research.cchmc.org

Code

Source code for the data processing pipelines can be found at:

https://bitbucket.org/grlee77/cmind-py

Documentation

An HTML build of the documentation is available at:

https://research.cchmc.org/c-mind-db/py-doc/html/

Pediatric Templates

Download the T1-weighted Pediatric study templates here:

https://bitbucket.org/grlee77/cmind-py/downloads

License

cmind-py is licensed under the terms of the BSD license. Some code included with cmind-py is also licensed under the BSD license. Please see the LICENSE file in the cmind-py distribution.

Documentation

• User Documentation (manual describing details of the C-MIND processing pipelines)
• C-MIND Database File Variables (descriptions of the raw and processed image volumes available in the C-MIND database)
• Pipeline API Documentation (comprehensive programmer’s reference)

Download/Installation

Please see the installation details in the user’s manual: installation instructions