JAG1 homepage - CCHMC Molecular Genetics Laboratory Mutation Database - Leiden Open Variation Database

CCHMC Molecular Genetics Laboratory Mutation Database

jagged 1 (Alagille syndrome) (JAG1)

LOVD v.2.0 Build 36 [ Current LOVD status ]
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Curator: Ammar Husami

General information
Gene name	jagged 1 (Alagille syndrome)
Gene symbol	JAG1
Chromosome Location	20p12.1-p11.23
Database location	https://research.cchmc.org/LOVD2/
Curator	Ammar Husami
PubMed references	View all (unique) PubMed references in the JAG1 database
Date of creation	April 20, 2010
Last update	April 29, 2010
Version	JAG1 100429
Add sequence variant	Submit a sequence variant
First time submitters	Register here
Reference sequence file	coding DNA reference sequence for describing sequence variants
Genomic refseq ID	NG_007496.1
Transcript refseq ID	NM_000214.2
Exon/intron information	Exon/intron information table
Total number of unique DNA variants reported	156
Total number of individuals with variant(s)	4
Total number of variants reported	158
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Graphical displays and utilities
Summary tables	Summary of all sequence variants in the JAG1 database, sorted by type of variant (with graphical displays and statistics)
Reading-frame checker	The Reading-frame checker generates a prediction of the effect of whole-exon changes
UCSC Genome Browser	Show variants in the UCSC Genome Browser (compact view)
Ensembl Genome Browser	Show variants in the Ensembl Genome Browser (compact view)
NCBI Sequence Viewer	Show distribution histogram of variants in the NCBI Sequence Viewer

Sequence variant tables
Unique sequence variants	Listing of all unique sequence variants in the JAG1 database, without patient data
Complete sequence variant listing	Listing of all sequence variants in the JAG1 database
Variants with no known pathogenicity	Listing of all JAG1 variants reported to have no noticeable phenotypic effect (note: excluding variants of unknown effect)

Search the database
By type of variant	View all sequence variants of a certain type
Simple search	Query the database by selecting the most important variables (exon number, type of variant, disease phenotype)
Advanced search	Query the database by selecting a combination of variables
Based on patient origin	View all variants based on your patient origin search terms

Links to other resources
HGNC	6188
Entrez Gene	182
OMIM - Gene	601920
UniProtKB (SwissProt/TrEMBL)	P78504
HGMD	JAG1
GeneCards	JAG1
GeneTests	JAG1
External link	Zhejiang University Center for Genetic and Genomic Medicine