AncestrySNPminer

Attributes:

Gene Information

Gene Symbol

Gene Description

Gene Associated Info

EnsemblGeneID

Functinal classification

SNP category

Affymetrix 6.0

Illumina 1M

Consequence to
Transcript

Sequence Variation

Gene Ontology

GO Function

GO Process

GO Component

Protein Information

UniProt

Select Database:

1000 Genomes Project Phase 3	HapMap
HGDP-CEPH	User-defined input
ExAC(Exome Aggregation Consortium)

HapMap

Text Query_(optional)

SNPs Genes

Position Query_(optional)

Chromosome^*
Population 1^*	Population 2^*
Measures of Marker Informativeness
Delta >= 0 0.30 0.60 0.90 custom value:	F_ST >= 0 0.25 0.40 0.75 custom value:
FIC >= 0 1.0 2.0 3.0 custom value:	SIC >= 0 0.30 0.60 0.90 custom value:
In >= 0 0.30 0.60 0.90 custom value:	Composite Measure <= 0 0.30 0.60 1.0 custom value:
Spacing between markers OR custom value:
Download File Format Tab-delimited text Excel Output

Human Genome Diversity Project

Text Query_(optional)

SNPs Genes

Position Query_(optional)

Chromosome^*
Population 1 ^*	Population 2^*
Measures of Marker Informativeness
Delta >= 0 0.30 0.60 0.90 custom value:	F_ST >= 0 0.25 0.40 0.75 custom value:
FIC >= 0 1.0 2.0 3.0 custom value:	SIC >= 0 0.30 0.60 0.90 custom value:
In >= 0 0.30 0.60 0.90 custom value:	Composite Measure <= 0 0.30 0.60 1.0 custom value:
Spacing between markers OR custom value:
Download File Format Tab-delimited text Excel Output

User defined

Ancestry Population 1^*

sample file format: file1.txt

Ancestry Population 2^*

sample file format: file2.txt

Measures of Marker Informativeness
Text Query _(optional) SNPs Genes	Position Query _{(optional)sub>}
Delta >= 0 0.30 0.60 0.90 custom value:	F_ST >= 0 0.25 0.40 0.75 custom value:
FIC >= 0 1.0 2.0 3.0 custom value:	SIC >= 0 0.30 0.60 0.90 custom value:
In >= 0 0.30 0.60 0.90 custom value:	Composite Measure <= 0 0.30 0.60 1.0 custom value:
Spacing between markers OR custom value:
Download File Format Tab-delimited text Excel Output

1000 Genomes

Text Query_(optional)

SNPs Genes

Position Query_(optional)

Chromosome^*
Population 1^*	Population 2^*
Measures of Marker Informativeness
Delta >= 0 0.30 0.60 0.90 custom value:	F_ST >= 0 0.25 0.40 0.75 custom value:
FIC >= 0 1.0 2.0 3.0 custom value:	SIC >= 0 0.30 0.60 0.90 custom value:
In >= 0 0.30 0.60 0.90 custom value:	Composite Measure <= 0 0.30 0.60 1.0 custom value:
Spacing between markers OR custom value:
Download File Format Tab-delimited text Excel Output

ExAC

Text Query_(optional)

SNPs Genes

Position Query_(optional)

Chromosome^*
Population 1^*	Population 2^*
Measures of Marker Informativeness
Delta >= 0 0.30 0.60 0.90 custom value:	F_ST >= 0 0.25 0.40 0.75 custom value:
FIC >= 0 1.0 2.0 3.0 custom value:	SIC >= 0 0.30 0.60 0.90 custom value:
In >= 0 0.30 0.60 0.90 custom value:	Composite Measure <= 0 0.30 0.60 1.0 custom value:
Spacing between markers OR custom value:
Download File Format Tab-delimited text Excel Output