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t-distributed stochastic neighbor embedding (t-SNE) plot maps mouse drop-seq pnd1 8003 cells in a 2D plane.
Each point in t-SNE plot denotes a cell colored by cell type. Query gene expression can be overlayed on top of cells.
Use interactive color legend on right to explore cell types with cell count in bracket.
Chart is desinged with interactive zooming freature for your exploration.
Boxplot is used to describe query gene expression of cells in each cell type.
Layout can be changed into Notched Box plot, Beeswarm plot and Scatter plot.
Frequency: Number of expressed cells / total number of cells in cluster.
Sensitivity: Number of expressed cells in cluster / total number of expressed cells in all clusters.