LGEA web portal
LungMAP
ACDMPV Story Page

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Definition

Sub cell type

Cell signatures (Prediction method at GitHub )

Query signatures of LGEA datasets

Query images by marker

Definition

Sub cell type

Cell signatures (Prediction method at GitHub )

Query signatures of LGEA datasets

Query images by marker

ACDMPV snRNA Query

Condition:
Cell info:

Query cell signatures:
Query gene expression:

Query result

*Signature genes were identified using one-tailed binomial test of gene expression in the cell type vs. all the other cells.

Criteria: FDR < 0.1, effect size ≥ 2, expression percentage in the selected cell type ≥ 20%, and overall expression percentage in all cells < 0.4. Top 100 genes with largest recall values in the selected cell type were shown in the table.

Download table Enrich genes with ToppFun

Query result

Expression distribution

Show:

Frequency and sensitivity:

DE test (pvalue and foldchange):

*One-tailed binomial test was used for the DE test.

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