Source Code of Pipeline and Data
CCHMC tools and applications
- Single Gene Query in LungGENS
- Cell Type Query in LungGENS
- Gene List Query in LungGENS
- Lung Developmental Gene Expression Profiles (LDProfiles)
- Pulmonary Biology Gene Expression Database (PBGE)
- BMI Hosted Resources List
- ToppGene Suite (ToppFun, ToppGene, ToppNet, ToppGenet)
- Alternative Splicing Analysis Tool (AltAnalyze)
- SINCERA: Single cell RNA-seq analysis to identify: cell types, cell type specific gene signatures; and driving forces of given cell types.
- SLICE: Determining Cell Differentiation and Lineage based on Single Cell Entropy
External tools and applications
- Genome Database
- NGS / Networks
- Annotation
- MicroArray
- Gene Prediction
- Promoter Analysis
- Protein Analysis
- Agile Protein Interaction DataAnalyzer (APID)
- Database of Interacting Proteins (DIP)
- ExPASy Proteomics Server
- InterProScan 5 Sequence Search
- iProClass
- Gene Expression Atlas (ExAtlas)
- UniProt: UniProt Knowledgebase (UniProtKB) of functional information on proteins, with accurate, consistent and rich annotation
- STRING:protein-protein interaction
- Sequence Analysis
- Disease